outcome
Bayek kills Flavius Metellus in Cyrene and avenges Khemu. Aya goes to Rome, and the Hidden Ones are founded. In the present, Layla declines William Miles' invitation but goes with him to Alexandria.
Assassin's Creed Origins
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Every ending, what changes it and what it means.
Origins ends with Flavius dead, Caesar's assassination in motion and the Hidden Ones founded by Bayek and Aya. The expansions add the first tenet and the pharaohs' curse.
What it means
The game is about how grief turns into purpose. Bayek's loss leads to the founding of an order whose first rule is to protect the innocent.
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Where this comes from
Every sentence above is built from facts confirmed by at least two independent sources. Sources used: Wikipedia, Assassin's Creed Wiki.